Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs3731555 | chr3:48206102 | G/A | 8.06E-5 | 503 | 37.7 | 37.6 | 23.1 | KM Plot |
KIRC | rs3734528 | chr6:26022244 | A/G | 6.8E-9 | 500 | 37.67 | 36.95 | 3.37 | KM Plot |
KIRC | rs3742970 | chr15:43622265 | C/A | 2.79E-5 | 496 | 36.4 | 38.88 | 10.97 | KM Plot |
KIRC | rs3752417 | chr6:26045905 | G/C | 6.33E-9 | 507 | 37.73 | 31.53 | 3.37 | KM Plot |
KIRC | rs3757362 | chr6:168398761 | C/T | 0.000102 | 492 | 37.25 | 38.9 | 7.57 | KM Plot |
KIRC | rs376281474 | chr2:67588075 | G/A | 2.29E-7 | 505 | 37.35 | 37.73 | 2.03 | KM Plot |
KIRC | rs3765148 | chr19:49447713 | A/G | 1.86E-6 | 509 | 3.63 | 36.87 | 37.47 | KM Plot |
KIRC | rs377343 | chr16:23648851 | C/T | 1.5E-8 | 502 | 37.53 | 37.9 | 1.62 | KM Plot |
KIRC | rs3778670 | chr6:168400266 | C/T | 0.000113 | 492 | 36.9 | 40 | 7.57 | KM Plot |
KIRC | rs3794172 | chr11:34929056 | T/C | 5.16E-13 | 507 | 37.73 | 26.12 | 3.48 | KM Plot |
KIRC | rs3797030 | chr4:186335582 | T/C | 5.26E-7 | 507 | 3.53 | 37.77 | 37.18 | KM Plot |
KIRC | rs3805397 | chr4:169168585 | T/C | 2.09E-8 | 509 | 37.33 | 39.23 | 3.1 | KM Plot |
KIRC | rs3805398 | chr4:169168688 | G/T | 2.09E-8 | 509 | 3.1 | 39.23 | 37.33 | KM Plot |
KIRC | rs3805399 | chr4:169168883 | G/A | 2.09E-8 | 509 | 37.33 | 39.23 | 3.1 | KM Plot |
KIRC | rs3807040 | chr6:41170895 | G/T | 3.78E-5 | 509 | 36.72 | 46.4 | 10.97 | KM Plot |